Generally, the iterable needs to already be sorted on the same key function. zip_longest is called izip_longest in python2, so that's my guess. Creating workflows with snakemake and conda, Installation error CNVkit: could not find the executable 'Rscript', parliament2 structural variant caller error, C extension: No module named 'pandas._libs.tslib' not built (pandas), Cannot install NumPy using pip and import it. I am using Python 3.5.2. In Python 3's itertools there is a function called zip_longest.It should do the same as izip_longest from Python 2.. Why the change in name? Is there a tool that can check whether m |= p holds, where m and p are both ltl formula, bcmwl-kernel-source broken on kernel: 5.8.0-34-generic. Why aren't "fuel polishing" systems removing water & ice from fuel in aircraft, like in cruising yachts? Source code for statsmodels.compat.python""" Compatibility tools for differences between Python 2 and 3 """ import functools import itertools import sys import urllib PY3 = (sys. I applied CNVkit to call copy number variations in a case-control study, with vascula... Use of this site constitutes acceptance of our, Traffic: 1847 users visited in the last hour, ImportError: cannot import name zip_longest, modified 9 months ago Acknowledgement sent to Lucas Nussbaum : New Bug report received and forwarded. If you install via conda I'm not sure where the cnvkit/test/ folder ends up. What authority does the Vice President have to mobilize the National Guard? Oh shoot, I didn't catch that mistake. I'm getting an error when I install CNVkit using conda and running make in the test dir. I am having some trouble running CNVkit 0.9.7, installed via conda in a dedicated environ... Hi everyone! Zero correlation of all functions of random variables implying independence. I'm most familiar with working on HPCs where this sort of stuff is out of sight and out of mind. Failing to import itertools in Python 3.5.2, Get all keys in Redis database with python, How to split dictionary into multiple dictionaries fast, Neat way to port nonpolyglot code from Py2 to Py3, Failing to import module named 'version' because izip_longest. Python 3 and 3to2¶. By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy. Is there a word for an option within an option? Thanks for your reply. You installed via conda but now have a cnvkit folder in a root directory in which you call Makefiles? Apply a power transform featurewise to make data more Gaussian-like. I have tried Python 2.7 too and ended up with same problem. rev 2021.1.7.38268, Stack Overflow works best with JavaScript enabled, Where developers & technologists share private knowledge with coworkers, Programming & related technical career opportunities, Recruit tech talent & build your employer brand, Reach developers & technologists worldwide. Our server also has 2.7 and I don't want to remove it because other users may require it. Underwater prison for cyborg/enhanced prisoners? How do I find complex values that satisfy multiple inequalities? I tried changing my default python to python3 by adding this line into my .bashrc file: By writting this post I hope to be able to solve the problem that is driving me craz... Hi, site design / logo © 2021 Stack Exchange Inc; user contributions licensed under cc by-sa. Using StandardScaler function of sklearn. and Privacy See my response to jared.andrews07 below. Making statements based on opinion; back them up with references or personal experience. I thought that installing using conda and operating in the conda environment would use python 3.5. I tried to install Biom format from the source under Windows: File "/home/fi1d18/.conda/envs/py3ve... After pulling the docker image not able to run parliament2, facing an import error how to sort o... 'm actually using the pandas module in my script. Please let me know what is the right course of action. What is your Python version? How does that make sense? from itertools import izip_longest ImportError: cannot import name 'izip_longest' So going through different forums, I realized I need to update the file using this import argument import izip_longest and update it to import zip_longest. I've edited the post to make it (hopefully) clearer. Agreement Stack Overflow for Teams is a private, secure spot for you and However,... Hi, all: version_info [0] >= 3) PY3_2 = sys. Thank You Working on 16.04.1 Ubuntu server. All positional and keyword arguments to the How would interspecies lovers with alien body plans safely engage in physical intimacy? How to teach a one year old to stop throwing food once he's done eating? IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE # SOFTWARE. You should not be working from outside your home directory, but you are. Copy sent to NeuroDebian Team . Why not just using the executable provided by conda on your data? Join Stack Overflow to learn, share knowledge, and build your career. Thank you! izip_longest was renamed to zip_longest in Python 3 (note, no i at the start), import that instead: If you need to write code that works both on Python 2 and 3, catch the ImportError to try the other name, then rename: One of the simple way of importing any feature is through object importing(ex: import itertools as it) unless you want to hide other features. How do I merge two dictionaries in a single expression in Python (taking union of dictionaries)? @python setup.py install from itertools import zip_longest You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. Thanks in advance. Sorry about the confusion. import functools import itertools import operator import sys import types __author__ = "Benjamin Peterson